Samuel Lampa

At least when running samtools-faidx without docker, the input fasta (.fa) file is replaced with a symlink pointing to itself: ``` bash [samuel 002-resequencing]$ ll *fa lrwxrwxrwx 1 samuel samuel...

This change just moves the docker import to the hints section, in the `bwa aln` tool. Note that this will break stuff because of [this bug in cwltool](https://github.com/common-workflow-language/cwltool/issues/80), so it...

[SBC] Parallella support?

4

I'm highly intrigued by both the gobot framework and the [parallella platform](https://www.parallella.org/), and just wanted to ask if there are any plans to support it in the near future?

fun as function keyword to line up code better

3

Small pet peeve: I never understood why Rust (not to mention Go) didn't go with `fun` as the keyword for functions, so that the function name lines up with four...

Rebuilding SMW data throws ARC2 errors

1

``` $ php extensions/SemanticMediaWiki/maintenance/rebuildData.php Long-running scripts may cause memory leaks, if a deteriorating rebuild process is detected (after many pages, typically more than 10000), please abort with CTRL-C and resume...

I got a report from a user that setting up the ARC2 tables when using PostgreSQL does not work. I'm looking into replicating the problem.

https://www.semantic-mediawiki.org/wiki/Help:Setting_values

Allow "assume sorted" option

5

We could do a slightly different processing algorithm if we can assume the data is sorted (which should be much more efficient using a pure text sorting tool anyway, for...

One could create, for each category, either on the category itself, or on a page named "List of {{{category}}}s", a page with the following content: ``` wiki {{#ask:[[Category:Compound]] |?HaspKa |?HasDOIUrl...