Samuel Marsh

Hi @hermespara, Not member of dev team but hopefully can be helpful. So I tested two and appears as you describe that the assay meta.data isn't being subsetted correctly. However,...

Hi @andreiprodan, the issue above was describing issue with assay meta data and not object meta data (where nCount nFeature are stored. Can you provide a reproducible example of your...

Hi, So ya it seems like you are missing a lot of your custom features in your object. To check how many are in the object you can run: ```...

Hi Kyle, Not member of dev team but I can give some general thoughts based on my own experience of updating compatibility of my package scCustomize. I think a number...

Hi @purisuto, Not member of dev team but hopefully can be helpful. You may also be interested in `Clustered_DotPlot` function from my package scCustomize which allows for cluster on both...

Happy to help!

Hi, Not member of dev team but hopefully can be helpful. Can you please post the code that you are running, how was `uc.data` created? What is the output of:...

Hi, Not member of dev team but hopefully can be helpful. Have you tried reading in file using Seurat V5 beta and the BPCells package (https://satijalab.org/seurat/articles/seurat5_bpcells_interaction_vignette)? Do you still have...

Hi @yojetsharma, As I haven't heard back that you encountered any further issues I'm going to close the issue. If my solution above did not solve your issue please let...

~- [ ] Add Spatial Assay to `as.anndata`?~ Not now. Have to figure out some image conversion metrics and not priority for time being.