Sam Seaver

Just to say, I'd been digging around, trying to find an answer to the same error. I knew the error was being printed by setup.py, but it was not passing...

I didn't know either way, but I'd assumed, given the vast number of duplicate names, that this might've been the case. Can you confirm?

Bad reactions associated to this problem were removed: https://github.com/ModelSEED/ModelSEEDDatabase/commit/51ea51c06da50e9deae0e074ed1f3bcde225d905

No I never got round to truly fixing this. The outcome of this problem was that a single instance of bad integration between two public databases led to a set...

Greg, From the beginning, ModelSEED metabolic reconstructions were designed to work interchangeably with different media, in that each medium, simply a set of compounds with constraints, could be designed independently,...

I'm terribly sorry it took me so long to get back to you, I missed this somehow. Essentially, the chemical structures that were associated with this compound shows that there...

There's only one biomass compound that is used by the ModelSEED infrastructure, any others are artefacts of merging other published models and in turn, should be merged with the parent...

What do you mean by "Yeast"? Do these structures map to any particular set of compound aliases in a published model for yeast? We can map the InChI-Keys to whatever...

Can you commit a flat file showing a direct mapping between the names of the mol files you committed and the Cyc identifiers in that database? We've a number of...

Can you also add a simple README that explains the source of the data with links etc. Thanks