Sam Hunter

https://s4hts.github.io/HTStream/ needs to be updated with a section for hts_LengthFilter.

hts_SeqScreener is meant to filter/identify reads originating from specific source sequences (PhiX as default, but also ribosomal sequences or adapters etc). **Is your enhancement request related to a problem? Please...

What should be done about Novaseq base qualities?

1

Instead of quality scores from 2 to 40, the Novaseq (and maybe iSeq100 and Nextseq?) has quality scores of only 2, 12, 23 and 37. 1) How should this be...