Samuel Degregori

Is there a more detailed guide?

3

First I would like to say I think this idea is revolutionary and I have been saying for years that academia needs to move to an open source online system....

MicrobiomeSeq not working on phyloseq object

4

Hi all, I am having a lot of issues with MicrobiomeSeq. Here are some example of errors I am getting: `kw_sig

Hi all, I made a per-gene biom file with ``` woltka classify \ --input ~/woltka/bowtie2 \ --coords ~/woltka/maps/wolr1_maps/proteins/coords.txt.xz \ --output ~/woltka/qiime2/gene.biom ``` where the bowtie2 folder had all my .sam...

TypeError: __init__() missing 1 required positional argument: 'dtype'

3

Hi, Trying to use gemelli as a qiime2 plugin and I get the following error: ``` /home/sdegregori/miniconda3/envs/qiime2-2023.7/lib/python3.8/site-packages/gemelli/preprocessing.py:423: RuntimeWarning: divide by zero encountered in log mat = np.log(matrix_closure(matrix_closure(mat) * branch_lengths)) numpy.core._exceptions._ArrayMemoryError:...