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eg for Score - `evaluate` that is overloaded to take indexes and particles - `do_evaluate` that is the implementation (and calls `evaluate_index` by default) and takes indexes - `evaluate_index` that...

drussel

Write all IMP particle attributes to RMF file

1

Use the hierarchy to find particles, but other than rigid bodies, don't translate.

drussel

Currently they compare the actual list, which can be expensive. Sorting on particleid and then using a hash would be reliable enough and much faster, I think.

drussel

Make core::ExcludeBody use grids for rigid bodies

2

Can implement it with algebra::Grid

drussel

That is, have IMP particles being RMF Nodes. This is a lot of work, and not clear it is worth it. But would be nice intellectually (as well as remove...

drussel

setup_environment.sh does not propagate mpirun path in $PATH

3

see title.

yannickspill

Make it look like other aspects of statistics.

drussel

Investigate getting good interrupt support in native code

2

When in C++ code called from python, interrupt doesn't work. This is annoying, and really bad with Ipython.

drussel

Looks like the following still use plain old Boost program_options instead: ``` foxs/foxs.cpp saxs_tools/cluster_profiles.cpp saxs_tools/compute_chi.cpp saxs_tools/rg.cpp saxs_tools/validate_profile.cpp ```

benmwebb

Run clang-modernize on IMP once we can turn on c++-11

1

It is awesome :-)

drussel