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salilab
The Integrative Modeling Platform
setup_particle can register a destructor object with the Model that gets called when the particle is removed from the model.
The algebra test test_uniform_rotation.py fails occasionally. The failure seems real - I changed the test (develop hash 3b492c437a) so that it would always fail, simply by repeating the same test...
- Use a Predicate to verify collisions so that RigidBodies can be used. - maintain a ClosePairContainer and use something like Distribute to divide up list of particles so checking...
That way it can take indexes also as input and things look pretty uniform.
Need to disable comparison and hashing in that case. Just direct it through an overloaded function or something.
Most operations on a VectorD are usage-checked (see `IMP_ALGEBRA_VECTOR_CHECK*` in `VectorBaseD.h`) to make sure we're not using a default-constructed vector. But they don't seem to work: ``` module load imp...
Using the techniques described here, https://integrativemodeling.org/nightly/doc/tutorial/multifit_3sfd.html, I was just wondering if it is possible to run multifit without enough pdb files to make a complete representation of the volume. For...
There doesn't appear to be any documentation explaining what a PairScore (or TripletScore etc), why you would use it, and under what situations, which solution could be faster.
It would be useful to be able to optionally require hierarchies to have the same (IMP) structure. E.g., you might create 10 copies of a protein, but you want make...