Advaith

Thanks for the response. When you get the pdb output generated from the code, were you able to visualize the sidechains too? We get a pdb with backbones only.

I wrote a script (based on AlphaFlow) to extract Evoformer representations. This code will help you get the single and pair representations you'll need to run graphormer. https://github.com/sai-advaith/evoformer_representation Is this...

The dataset consisted of protein fasta sequence (which you can get online) and evoformer representation (from the repo I shared). I will get back to you regarding the model weights.