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error: Error -3 while decompressing data: invalid code lengths set

Open Ryeeeeeeeeee opened this issue 11 months ago • 3 comments

Dear developer, I get an error when running the following code: progeny = dc.get_progeny(organism='Mus musculus', top=500)

the error is : error: Error -3 while decompressing data: invalid code lengths set

Desktop (please complete the following information):

  • OS: Ubuntu 20.04
  • Python version: 3.9 -package version: absl-py 1.4.0 aiohttp 3.8.3 aiosignal 1.3.1 alembic 1.9.1 anndata 0.8.0 annotated-types 0.6.0 annoy 1.17.1 anyio 3.6.2 appdirs 1.4.4 argon2-cffi 21.3.0 argon2-cffi-bindings 21.2.0 asttokens 2.2.1 async-generator 1.10 async-timeout 4.0.2 attrs 22.2.0 Babel 2.11.0 backcall 0.2.0 backports.functools-lru-cache 1.6.4 bcrypt 4.1.2 beautifulsoup4 4.11.1 bleach 6.0.0 blinker 1.5 bokeh 3.0.3 boltons 23.1.1 Bottleneck 1.3.6 brotlipy 0.7.0 cached-property 1.5.2 cachetools 5.3.0 cell2location 0.1.3 certifi 2024.2.2 certipy 0.1.3 cffi 1.15.1 charset-normalizer 2.1.1 chex 0.1.7 click 8.1.3 cloudpickle 2.2.1 cmake 3.26.1 colorama 0.4.6 comm 0.1.2 conda 22.11.1 conda-package-handling 2.0.2 conda_package_streaming 0.7.0 contextlib2 21.6.0 contourpy 1.0.7 cryptography 42.0.5 cycler 0.11.0 Cython 0.29.33 cytoolz 0.12.0 dask 2022.11.0 debugpy 1.6.6 decorator 5.1.1 decoupler 1.6.0 defusedxml 0.7.1 detecto 1.2.2 dill 0.3.6 distributed 2022.11.0 dm-tree 0.1.8 docrep 0.3.2 entrypoints 0.4 et-xmlfile 1.1.0 etils 1.2.0 exceptiongroup 1.1.1 executing 1.2.0 face 20.1.1 fastjsonschema 2.16.2 flax 0.6.8 flit_core 3.8.0 fonttools 4.38.0 frozenlist 1.3.3 fsspec 2023.1.0 future 0.18.3 glom 23.5.0 gmpy2 2.1.2 google-auth 2.16.0 google-auth-oauthlib 0.4.6 greenlet 2.0.2 grpcio 1.51.1 h5py 3.8.0 HeapDict 1.0.1 hyperopt 0.2.7 idna 3.4 igraph 0.10.3 imagecodecs 2023.1.23 imageio 2.25.0 importlib-metadata 6.0.0 importlib-resources 5.10.2 inflect 7.0.0 iniconfig 2.0.0 ipykernel 6.21.0 ipympl 0.9.2 ipython 8.12.0 ipython-genutils 0.2.0 ipywidgets 8.0.4 jax 0.4.8 jaxlib 0.4.7 jedi 0.18.2 Jinja2 3.1.2 joblib 1.2.0 json5 0.9.5 jsonschema 4.17.3 jupyter-client 7.3.4 jupyter_core 5.2.0 jupyter-events 0.6.3 jupyter-server 1.23.5 jupyter_server_terminals 0.4.4 jupyter-starters 1.1.0 jupyter-telemetry 0.1.0 jupyterhub 3.1.1 jupyterlab 3.5.3 jupyterlab-pygments 0.2.2 jupyterlab_server 2.19.0 jupyterlab-widgets 3.0.5 kiwisolver 1.4.4 leidenalg 0.9.1 libmambapy 1.2.0 lightning-utilities 0.8.0 lit 16.0.0 llvmlite 0.39.1 locket 1.0.0 loompy 3.0.6 louvain 0.8.0 lxml 5.1.0 lz4 4.2.0 Mako 1.2.4 mamba 1.2.0 Markdown 3.4.1 markdown-it-py 2.2.0 MarkupSafe 2.1.2 matplotlib 3.7.1 matplotlib-inline 0.1.6 mdurl 0.1.2 mistune 2.0.4 ml-collections 0.1.1 ml-dtypes 0.0.4 mpmath 1.3.0 msgpack 1.0.5 mudata 0.2.1 multidict 6.0.4 multipledispatch 0.6.0 munkres 1.1.4 natsort 8.3.1 nbclassic 0.4.8 nbclient 0.7.2 nbconvert 7.2.9 nbformat 5.7.3 nbresuse 0.4.0 nest-asyncio 1.5.6 networkx 3.0 nose 1.3.7 notebook 6.5.2 notebook_shim 0.2.2 numba 0.56.4 numexpr 2.7.3 numpy 1.23.5 numpy-groupies 0.9.20 numpyro 0.11.0 nvidia-cuda-cupti-cu11 11.7.101 nvidia-cuda-nvrtc-cu11 11.7.99 nvidia-cuda-runtime-cu11 11.7.99 nvidia-cufft-cu11 10.9.0.58 nvidia-curand-cu11 10.2.10.91 nvidia-cusparse-cu11 11.7.4.91 nvidia-nccl-cu11 2.14.3 nvidia-nvtx-cu11 11.7.91 oauthlib 3.2.2 omnipath 1.0.8 opencv-python 4.7.0 openpyxl 3.1.2 opt-einsum 3.3.0 optax 0.1.4 orbax 0.1.7 packaging 23.0 pamela 1.0.0 pandas 2.0.0 pandocfilters 1.5.0 paramiko 3.4.0 parso 0.8.3 partd 1.3.0 patsy 0.5.3 pexpect 4.8.0 pickleshare 0.7.5 Pillow 9.4.0 pip 23.0.1 pkgutil_resolve_name 1.3.10 platformdirs 2.6.2 plotly 5.14.1 pluggy 1.0.0 ply 3.11 pooch 1.6.0 prometheus-client 0.16.0 prompt-toolkit 3.0.36 protobuf 4.21.12 psutil 5.9.4 ptyprocess 0.7.0 pure-eval 0.2.2 py4j 0.10.9.7 pyasn1 0.4.8 pyasn1-modules 0.2.7 pycosat 0.6.4 pycparser 2.21 pycurl 7.45.1 pydantic 2.6.4 pydantic_core 2.16.3 pygeos 0.14 Pygments 2.14.0 PyJWT 2.6.0 PyNaCl 1.5.0 pynndescent 0.5.8 pyOpenSSL 23.0.0 pyparsing 3.0.9 pypath_common 0.2.0 pypath-omnipath 0.16.10 PyQt5 5.15.7 PyQt5-sip 12.11.0 pyreadr 0.5.0 pyro-api 0.1.2 pyro-ppl 1.8.4 pyrsistent 0.19.3 pysftp 0.2.9 PySocks 1.7.1 pytest 7.2.2 python-dateutil 2.8.2 python-json-logger 2.0.4 python-louvain 0.16 pytorch-lightning 1.9.4 pytz 2022.7.1 pyu2f 0.1.5 PyWavelets 1.4.1 PyYAML 6.0 pyzmq 25.0.0 rdata 0.11.2 requests 2.28.2 requests-oauthlib 1.3.1 rfc3339-validator 0.1.4 rfc3986-validator 0.1.1 rich 13.3.3 rsa 4.9 ruamel.yaml 0.17.21 ruamel.yaml.clib 0.2.7 scanpy 1.9.3 scikit-image 0.19.3 scikit-learn 1.2.1 scipy 1.10.1 scvi-tools 0.20.3 seaborn 0.12.2 Send2Trash 1.8.0 session-info 1.0.0 setuptools 66.1.1 shapely 2.0.1 sip 6.7.7 six 1.16.0 sniffio 1.3.0 snuggs 1.4.7 sortedcontainers 2.4.0 soupsieve 2.3.2.post1 SQLAlchemy 2.0.0 sqlparse 0.4.4 stack-data 0.6.2 statsmodels 0.13.5 stdlib-list 0.8.0 sympy 1.11.1 tables 3.7.0 tabulate 0.9.0 tblib 1.7.0 tensorboard 2.11.2 tensorboard-data-server 0.6.1 tensorboard-plugin-wit 1.8.1 tensorstore 0.1.35 terminado 0.17.1 texttable 1.6.7 threadpoolctl 3.1.0 tifffile 2023.1.23.1 timeloop 1.0.2 tinycss2 1.2.1 toml 0.10.2 tomli 2.0.1 toolz 0.12.0 torch 1.13.1 torchaudio 0.13.1 torchmetrics 0.11.4 torchvision 0.14.1 tornado 6.1 tqdm 4.64.1 traitlets 5.9.0 typing_extensions 4.10.0 tzdata 2023.3 umap-learn 0.5.3 unicodedata2 15.0.0 urllib3 1.26.14 vincent 0.4.4 wcwidth 0.2.6 webencodings 0.5.1 websocket-client 1.5.0 Werkzeug 2.2.2 wheel 0.38.4 widgetsnbextension 4.0.5 wrapt 1.16.0 xarray 2024.2.0 xlrd 2.0.1 xyzservices 2022.9.0 yarl 1.8.2 zict 2.2.0 zipp 3.12.0 zstandard 0.19.0

Ryeeeeeeeeee avatar Mar 19 '24 10:03 Ryeeeeeeeeee

Hello, can you please share the full traceback?

deeenes avatar Mar 20 '24 19:03 deeenes