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LIANA's development continous as LIANA+

Open dbdimitrov opened this issue 9 months ago • 0 comments

Development of LIANA keeps going but most of the efforts are currently only in Python - to be ported also to R in the future.

Please check: https://liana-py.readthedocs.io/en/latest/ and https://github.com/saezlab/liana-py

While we work on porting LIANA+ to R, for easy conversion from R to Python, we recommend using Zellkonverter.

One can save a SingleCellExperiment object using the zellkonverter:writeH5AD function, and reload the resulting AnnData in Python

Converting from Seurat to SingleCellExperiment is also straightforward using the Seurat:as.SingleCellExperiment function.

dbdimitrov avatar Apr 29 '24 18:04 dbdimitrov