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Set scanpy as a "common" dependency

Open dbdimitrov opened this issue 11 months ago • 0 comments

Currently scanpy is being used as a core dependency of LIANA.

However, in reality it's used only in a couple of places, the most problematic being the calculation of DEGs within _liana_pipe.py. If these are changed, then scanpy can be removed from the core dependencies.

dbdimitrov avatar Jul 27 '23 08:07 dbdimitrov