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Large number of pvals are `0` without specificity

Open and-rewsmith opened this issue 5 months ago • 4 comments

Describe the bug There are a large amount of pvals which look to be zero without increased specificity, despite the fact that some entries have 3-4 significant figures.

I also encountered this behavior in your own documentation: https://liana-py.readthedocs.io/en/latest/notebooks/basic_usage.html

Below this quote in the docs there is a graph with the same issue:

By default, liana will be run inplace and results will be assigned to adata.uns['liana_res']. Note that the high proportion of missing entities here is expected, as we are working on the reduced dimensions data.

To Reproduce See above for repro steps. Link to repro in your own docs.

Screenshots Your documentation showcases this issue.

and-rewsmith avatar Sep 19 '24 18:09 and-rewsmith