decoupler-py icon indicating copy to clipboard operation
decoupler-py copied to clipboard

CytoSig resource providing incorrect data

Open adamgayoso opened this issue 1 year ago • 2 comments

Describe the bug It's unclear what the CytoSig resource is outputting. For example,

res = dc.get_resource('CytoSig')
res

Provides a DataFrame with this info

Screen Shot 2022-09-26 at 3 15 00 PM

which has 36 unique cytokines.

Meanwhile going to the cytosig repo and downloading their data

pd.read_csv("https://raw.githubusercontent.com/data2intelligence/CytoSig/master/CytoSig/signature.centroid", sep="\t")

provides 43 columns (cytokines, and with completely different names than the resource code above, but with names that make a lot more sense)

Screen Shot 2022-09-26 at 3 17 00 PM

adamgayoso avatar Sep 26 '22 22:09 adamgayoso