OmnipathR
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Vinayagam et al. suppl: download fails from sciencemag due to lack of cookie
Trying to run:
library(OmnipathR)
library(nichenetr)
nichenet_results <- nichenet_main(
expressed_genes_transmitter = expressed_genes_transmitter,
expressed_genes_receiver = expressed_genes_receiver,
genes_of_interest = genes_of_interest,
background_genes = background_genes,
signaling_network = list(
cpdb = NULL,
evex = list(min_confidence = 1.0)
),
gr_network = list(only_omnipath = TRUE),
n_top_ligands = 20,
mlrmbo_optimization_param = list(ncores = 4)
)
Results in:
[2023-07-10 12:29:26] [ERROR] [OmnipathR] Failed to download https://www.science.org/action/downloadSupplement?doi=10.1126%2Fscisignal.2001699&file=4_rs8_tables_s1_s2_and_s6.zip (attempt 3/3); error: HTTP 403