Sadik

Thanks for that pointing out. I run it on 500G RAM machine with 32 cpu still getting the same error. I am not aware of how to allocate memory size...

Any suggestions on this, please?

Hi, CONSENT-polish failed at sort step. Any suggestions please? `CONSENT-polish --contigs contigs.fasta --reads epo.pacbio.fasta.gz --out polished.fasta ` Last lines of err.out ``` [M::main] Version: 2.17-r941 [M::main] CMD: minimap2 --dual=yes -PD...

@nextgenusfs any suggestion please? I tested this with multiple genotypes (with Augustus and braker hints from BRAKER3) and it's terminating with "IndexError: list index out of range" error at stage...

I rerun it without --augustus_gff but EVM failed to combine hints. ``` [Oct 16 11:42 PM]: 138,994 predictions from GlimmerHMM [Oct 16 11:42 PM]: Summary of gene models passed to...

In my last post Augusts was run from augustus I did remove the external input --augustus_gff. Here is tail of stdout ``` [Oct 17 09:03 AM]: Mapping 1,065 proteins to...

Hi Arun, scraps.txt/subreads.txt are captured fofn and here is the content `/home/raw_data/file.scraps.bam` `/home/raw_data/file.subreads.bam` Best