Christian Dallago

Awesome, thanks @j3xugit && @agitter @j3xugit I don't have something worth going over as of yet. I will probably have something by end of weekend (I do most of my...

A much greater list of other things would fit in #1003 : https://github.com/yangkky/Machine-learning-for-proteins I feel like that PR is hardly up to date by now (how things change!) Just give...

I have a system where neither Docker nor compilation are an option without going through extensive wall times with system admins and alike :( The conda install option was really...

Hmm, have to look this one up. Could you send the sequence file?

``` /mnt/nfs2/projects/bio_embeddings_extract_unsupervised/config.yml ``` In case you re-run this, please run this in a different directory (I'm actively working in that dir!). Notice that embedding will take a few hours, after...

Oh wow... There's a bunch of memory leak issues opened, some sound very close to what might be happening here: https://github.com/pytorch/pytorch/issues?q=is%3Aissue+is%3Aopen+memory+leak But with 4.8k issues opened... I wonder if it...

Now this is starting to become terribly annoying. Since I'm transferring the reduced embeddings to GPU RAM when doing the annotation transfer, this happens: ``` 2020-09-01 16:51:23,022 INFO Created the...

**[UPDATE to https://github.com/sacdallago/bio_embeddings/issues/40#issuecomment-685429949]** Running just the transfer part (config with only that stage, passing the embeddings from the previous run) still throws an OOM error: ``` 2020-09-02 10:54:02,015 INFO Created...

Thanks for reporting the issue. Coudl you give me some more detail about how you install the pipeline (from pypi or from github?)

Thanks @jondeans . I noticed that CI also started failing us recently do to the outdated depenency stack. I guess I'll make a student' life miserable for the next week...