shui

Hello, I have been using Harmony to integrate our single cell cancer data set which consists of immune, stromal and tumour cells. This data sets also has several patients diagnosed...

Errors when using low_res parameter to constrain optimization

1

Hello, Thanks for developing this useful tool! We currently use Seurat to preprocess our single cell data and I wanted to try using your tool and took the following steps....

Hello, When I execute SCCAF_optimize_all() with plot = TRUE, it will eventually seem to hang after plotting the ROC plots. I have to close the figure window inorder to gain...

Question: plotting batch info when running vai run_conga.py script

1

Hello, Thanks for this useful tool, I am using it quite alot and wanted to run the following feature where I can plot batch information to the logo plots. Specifically,...