Simon Andrews

If you've run this as a single-threaded process then you should be able to figure out which file is causing the crash/stall as it would be the next one in...

If you're using the latest FastQC then it will assign 512MB to each thread you launch. This should be enough for pretty much all libraries, but if you need more...

> I am trying to find logs for this process. But I couldn't find the logs, where the logs will be written to? Directly in the console or somewhere. If...

Something odd is going on with this data. This type of error is certainly possible in fastqc, but it would only happen if there were no bases anywhere in the...

Sorry, I was on holiday when this came through. Automation of large numbers of files on windows is not really staight forward. The launch script used for linux / mac...

Yeah, that's just a flat out bug. I'll either need to explicitly assign ```-d``` to the directory option, or just remove it from the docs. The ```--dir``` will work and...

Yeah, there's not really a nice way to handle that. The problem is that just reading the next line from that file immediately exhausts the memory the program has available....

I saw the same thing - reads were being duplicated. There was a previous issue #109 which reported the same problem and is supposedly fixed, but this still happens with...

So this sounds like the installation is wrong. Either you're missing big chunks of files, or you've donwloaded the wrong zip file. The zip file you need is [this one](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.12.1.zip)....

What levels of methylation are you observing? Do you actually see any difference in the quantitated values? The statistical tests are only there to give you confidence that an effect...