Simon Andrews

That looks like a crash in one of the system libraries on your machine. Specifically in libawt which is a library which draws graphical interfaces. It could be that the...

You've found one option for this which will combine the full set of results. To be honest, if you're just looking at data quality then it's pretty unlikely that you'll...

The flowcell id (if present) shouldn't be too hard. You'd have to make some kind of assumption that the ID you see in the first entry is valid for the...

I'll take a look at the file but I'm stuck with very limited internet for a while. Do you know whether the file could have been created by concatenating several...

I did some testing and it looks like it is the issue of having multiple headers in the middle of the file. ``` $ zcat file.fq.gz | head -1000000 >...

I had a look and it seems the Jbzip2 library we're currently using doesn't support this, and seems to be unmaintained. However the apache commons compress library will work and...

The current release doesn't support CRAM as we're still using the older samtools java library to read BAM files and that predates CRAM. I think it would be easy enough...

I had a go at implementing this and there is a basic implementation in the cram branch which should work for the test file which was specified. At the moment...

Got a reply from the htslib people: > Your inquiry is only the second time in several years that I can recall someone asking about 2.0 (though the other time...

Ha! That'll be a bug. I think there's a regex which removes tailing zeros from when all the plots used to be using floating point on the y axis. Guess...