SuchTree

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SuchTree won't build in Python 3.9

2

``` Building wheels for collected packages: SuchTree Building wheel for SuchTree (setup.py) ... error ERROR: Command errored out with exit status 1: command: /Users/APCamargo-M55/.mambaforge/envs/snakemake/bin/python3.9 -u -c 'import io, os, sys,...

apcamargo

It would be cool to be able to initialize new SuchTree objects like this : ```python T1 = SuchTree( '~/data/mytree.tree' ) T2 = SuchTree( 'http://example.com/data/mytree.tree' ) T3 = SuchTree( '(A:0.1,B:0.2,(C:0.3,D:0.4):0.5);'...

ryneches

Build a permutation test function for individual subsets.

ryneches

Consider linking datasets included here into GLOBI?

1

See https://www.globalbioticinteractions.org/contribute.html Guess one should check to make sure none of these are already in GLOBI, but would be great to include.

cboettig

Implement SuchLinkedTree.subset_write(), which should write a tree and a link table for the current subset.

ryneches

Design a significance test that takes into account multiple subset tests.

ryneches

Write some tests for SuchLinkedTree.linked_distances().

ryneches

I should probably post some.

ryneches

Allow the user to request bipartitions involving a subset of leaf nodes.

ryneches