SuchTree
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Published
20 hours ago •
ryneches
ryneches
SuchTree won't build in Python 3.9
Building wheels for collected packages: SuchTree
Building wheel for SuchTree (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Users/APCamargo-M55/.mambaforge/envs/snakemake/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/setup.py'"'"'; __file__='"'"'/private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-wheel-m22cq_q2
cwd: /private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/
Complete output (271 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.9
creating build/lib.macosx-10.9-x86_64-3.9/SuchTree
copying SuchTree/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/SuchTree
running build_ext
*** NOTE: Found Cython, extension files will be transpiled if this is an install invocation.
skipping 'SuchTree/SuchTree.c' Cython extension (up-to-date)
building 'SuchTree.SuchTree' extension
creating build/temp.macosx-10.9-x86_64-3.9
creating build/temp.macosx-10.9-x86_64-3.9/SuchTree
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/APCamargo-M55/.mambaforge/envs/snakemake/include -fPIC -O2 -isystem /Users/APCamargo-M55/.mambaforge/envs/snakemake/include -I/Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include -I/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9 -c SuchTree/SuchTree.c -o build/temp.macosx-10.9-x86_64-3.9/SuchTree/SuchTree.o
In file included from SuchTree/SuchTree.c:566:
In file included from /Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944:
/Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
SuchTree/SuchTree.c:9147:33: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_7; __pyx_t_2+=1) {
~~~~~~~~~ ^ ~~~~~~~~~
SuchTree/SuchTree.c:11227:30: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
__pyx_t_3 = ((__pyx_v_node > __pyx_v_self->length) != 0);
~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~
SuchTree/SuchTree.c:11601:34: warning: result of comparison of constant -1 with expression of type 'unsigned int' is always false [-Wtautological-constant-out-of-range-compare]
__pyx_t_1 = ((__pyx_v_parent == -1L) != 0);
~~~~~~~~~~~~~~ ^ ~~~
SuchTree/SuchTree.c:19898:37: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:19925:45: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:20353:45: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:20599:37: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:20247:15: warning: code will never be executed [-Wunreachable-code]
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^~~~~~~~~~~~~
SuchTree/SuchTree.c:20247:9: note: silence by adding parentheses to mark code as explicitly dead
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^
/* DISABLES CODE */ ( )
SuchTree/SuchTree.c:20215:15: warning: code will never be executed [-Wunreachable-code]
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^~~~~~~~~~~~~
SuchTree/SuchTree.c:20215:9: note: silence by adding parentheses to mark code as explicitly dead
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^
/* DISABLES CODE */ ( )
SuchTree/SuchTree.c:42684:43: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree_SuchTree.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42707:50: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree_SuchLinkedTrees.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42716:63: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct____init__.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42722:63: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_1_genexpr.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42728:76: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_2_get_descendant_nodes.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42734:66: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_3_nodes_data.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42740:66: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_4_edges_data.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42746:65: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_5_adjacency.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42754:26: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_array.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42759:32: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_MemviewEnum.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42774:31: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_memoryview.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42787:36: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_memoryviewslice.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:43595:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:22: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:52: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:26: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:59: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:46122:16: warning: 'PyUnicode_FromUnicode' is deprecated [-Wdeprecated-declarations]
return PyUnicode_FromUnicode(NULL, 0);
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:551:1: note: 'PyUnicode_FromUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
23 warnings and 12 errors generated.
error: command '/usr/bin/clang' failed with exit code 1
----------------------------------------
ERROR: Failed building wheel for SuchTree
Running setup.py clean for SuchTree
Failed to build SuchTree
Installing collected packages: SuchTree
Running setup.py install for SuchTree ... error
ERROR: Command errored out with exit status 1:
command: /Users/APCamargo-M55/.mambaforge/envs/snakemake/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/setup.py'"'"'; __file__='"'"'/private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-record-d3ddb3ph/install-record.txt --single-version-externally-managed --compile --install-headers /Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/SuchTree
cwd: /private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/
Complete output (271 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.9
creating build/lib.macosx-10.9-x86_64-3.9/SuchTree
copying SuchTree/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/SuchTree
running build_ext
*** NOTE: Found Cython, extension files will be transpiled if this is an install invocation.
skipping 'SuchTree/SuchTree.c' Cython extension (up-to-date)
building 'SuchTree.SuchTree' extension
creating build/temp.macosx-10.9-x86_64-3.9
creating build/temp.macosx-10.9-x86_64-3.9/SuchTree
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/APCamargo-M55/.mambaforge/envs/snakemake/include -fPIC -O2 -isystem /Users/APCamargo-M55/.mambaforge/envs/snakemake/include -I/Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include -I/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9 -c SuchTree/SuchTree.c -o build/temp.macosx-10.9-x86_64-3.9/SuchTree/SuchTree.o
In file included from SuchTree/SuchTree.c:566:
In file included from /Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944:
/Users/APCamargo-M55/.mambaforge/envs/snakemake/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
SuchTree/SuchTree.c:9147:33: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_7; __pyx_t_2+=1) {
~~~~~~~~~ ^ ~~~~~~~~~
SuchTree/SuchTree.c:11227:30: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
__pyx_t_3 = ((__pyx_v_node > __pyx_v_self->length) != 0);
~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~
SuchTree/SuchTree.c:11601:34: warning: result of comparison of constant -1 with expression of type 'unsigned int' is always false [-Wtautological-constant-out-of-range-compare]
__pyx_t_1 = ((__pyx_v_parent == -1L) != 0);
~~~~~~~~~~~~~~ ^ ~~~
SuchTree/SuchTree.c:19898:37: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:19925:45: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:20353:45: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:20599:37: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
~~~~~~~~~~ ^ ~~~~~~~~~~
SuchTree/SuchTree.c:20247:15: warning: code will never be executed [-Wunreachable-code]
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^~~~~~~~~~~~~
SuchTree/SuchTree.c:20247:9: note: silence by adding parentheses to mark code as explicitly dead
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^
/* DISABLES CODE */ ( )
SuchTree/SuchTree.c:20215:15: warning: code will never be executed [-Wunreachable-code]
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^~~~~~~~~~~~~
SuchTree/SuchTree.c:20215:9: note: silence by adding parentheses to mark code as explicitly dead
if (0 && (__pyx_tmp_idx < 0 || __pyx_tmp_idx >= __pyx_tmp_shape)) {
^
/* DISABLES CODE */ ( )
SuchTree/SuchTree.c:42684:43: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree_SuchTree.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42707:50: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree_SuchLinkedTrees.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42716:63: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct____init__.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42722:63: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_1_genexpr.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42728:76: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_2_get_descendant_nodes.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42734:66: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_3_nodes_data.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42740:66: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_4_edges_data.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42746:65: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type_8SuchTree_8SuchTree___pyx_scope_struct_5_adjacency.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42754:26: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_array.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42759:32: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_MemviewEnum.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42774:31: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_memoryview.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:42787:36: error: no member named 'tp_print' in 'struct _typeobject'
__pyx_type___pyx_memoryviewslice.tp_print = 0;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
SuchTree/SuchTree.c:43595:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:22: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:52: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43595:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:26: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op) : \
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:59: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:43611:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
(PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
PyUnicode_WSTR_LENGTH(op)))
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
#define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
Py_DEPRECATED(3.3)
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
SuchTree/SuchTree.c:46122:16: warning: 'PyUnicode_FromUnicode' is deprecated [-Wdeprecated-declarations]
return PyUnicode_FromUnicode(NULL, 0);
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/cpython/unicodeobject.h:551:1: note: 'PyUnicode_FromUnicode' has been explicitly marked deprecated here
Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
^
/Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
23 warnings and 12 errors generated.
error: command '/usr/bin/clang' failed with exit code 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Users/APCamargo-M55/.mambaforge/envs/snakemake/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/setup.py'"'"'; __file__='"'"'/private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-install-r8z5lgrm/suchtree_e817e920bef142798bed95250fd8571d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/h4/7rmy02997p3_xb4qgjzx257c0000gp/T/pip-record-d3ddb3ph/install-record.txt --single-version-externally-managed --compile --install-headers /Users/APCamargo-M55/.mambaforge/envs/snakemake/include/python3.9/SuchTree Check the logs for full command output.
