gqt
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ryanlayer
A genotype query interface.
I have followed the instructions in the installation section carefully, but whenever I run `make`, I get the following error: `/bin/ld: /home/azureuser/vcf-browsers/htslib/libhts.a(hfile_s3.o): undefined reference to symbol 'EVP_sha256@@OPENSSL_1_1_0' /bin/ld: /lib/x86_64-linux-gnu/libcrypto.so.1.1: error...
I wonder if it is possible to run the gqt commands on remote data by providing urls? as this would solve a big hurdle of data transfers of huge VCF...
I am compiling a gqt in mac and met with the below error. I have installed htslib succesfully and added the path in the gqt src/Makefile. Can anyone help to...
I have a BCF file, and one line has a very large annotation field (2 million characters - almost 10MB), which crashes `gqt query`. This stems from the conservative 1MiB...
Motivated by suggestions from @brentp and Manuel Rivas (https://twitter.com/manuelrivascruz/status/590250919570186240), it is clear that a simple API would be beneficial. In particular, providing a well-designed C API will have multiple benefits:...
It appears that Sqlite is flushing to disk quite aggressively, which makes importing large pedigree databases extremely slow. Even on an SSD, it takes a very long time to run...
a query with `-g "maf()>.10"` returns zero variants but `-g "maf()>0.10"` works.
We should load the first 100K records from the chr22 Phase 1 file into GEMINI with the PED file so that we can compare the results of free form queries.
