Ryan Feathers

Extend cryodrgn filter to cryodrgn-et

1

Running cryodrgn filter for cryoDRGN-ET produces the following error ``` File "/scratch/gpfs/ZHONGE/rf2366/conda/cryodrgn_internal/bin/cryodrgn", line 8, in sys.exit(main()) File "/scratch/gpfs/ZHONGE/rf2366/dev/cryodrgn_internal/cryodrgn/__main__.py", line 74, in main args.func(args) File "/scratch/gpfs/ZHONGE/rf2366/dev/cryodrgn_internal/cryodrgn/commands/filter.py", line 152, in main plot_df...

Add a .cxc script for `open ./*.mrc vseries true` in the pc and kmeans output folders for easier opening.

cryoDRGN-ET force --ntilts

3

Add option to force `--ntilts` for `cryodrgn backproject_voxel ` and/or `cryodrgn train_vae`. It would be useful to have an option to exclude particles with tilts < `--ntilts`. For example, if...

The current `cryoDRGN_ET_viz.ipynb` jupyter notebook is missing some functionality such as select by kmeans, GMM, remove z outliers, etc. and could be cleaned up in general.

cryodrgn filter for ET data saving tilt ind for inverse.pkl

1

When selecting subtomo particles from the `cryodrgn filter` umap interatactive gui the selected_ind.pkl are correctly saved as particle indices but the inverse selection is saved as tilt indices.