Ryan Yancey

icon company Zymo Research Corp. icon location Irvine, California icon location Bioinformatics Associate at Zymo Research | MS in Bioinformatics from Johns Hopkins University

Results 3 issues of Ryan Yancey

Fix minor `shuffleBed` option typo

1 comment

The `-noOverlapping` flag is mistakenly referenced in the `-allowBeyondChromEnd` help text.

Adjust 0-base coordinates from UCSC database downloads

Resolves #54

CpG island annotations for `hg38`, `mm10`, `rn6`, and `galGal5` are 0-based instead of 1-based

Thank you for writing such a useful package! I just want to make it known that downloading/creating the CpG island, shore, shelf and inter annotations with `build_annotations()` results in 0-based...