Rutger Vos

Self-explanatory, I guess.

Would be nice if there was a filter for low precision

1

I think this is a great package, and what I want is easy to implement in some other way so I'm just being lazy - but it would be nice...

relationship between user/computed BPM for samples and patterns

4

Hi Matthew, first of all: bless you for making this app! I think this is going to be very helpful so I salute you for putting your spare time into...

Wrappers for ExaML, ExaBayes, *BEAST

2

Hi, not sure if this is the right place to ask but we have been writing some Bio::Tools::Run::Phylo::\* wrappers (for the above-mentioned programs) that we would like to contribute to...

libc++abi: terminating with uncaught exception of type std::runtime_error: ERROR in SPR round (LIBPLL-3584): Constraint check failed after SPR round!

7

I'm attempting the following constrained search: ```{bash} raxml-ng --model GTR+G --outgroup GBMA5933-13,GBMNA13253-19,GBMA10242-15 --tree-constraint raxml-ready.tre --msa raxml-ready.fa --search ``` But this throws the exception: `libc++abi: terminating with uncaught exception of type...

The raxml tool is mostly used for inferring phylogenies, and the outputs of the wrapper are geared towards that purpose, it seems. However, with setting `-f v`, other outputs are...

added getSamples() to process samples directly

3

Hi, I've added a method to access the sample data directly (one of your TODO items). Hope this is useful. Thanks for figuring out the WAV header stuff for me...

Topics to cover in v.1.1.*

1

- [ ] ShareLaTeX - [ ] https://beta.mybinder.org/

E-book versions

2

It would be good to have somewhat better releases for the next version. E.g.: - make a PDF version and tag that as "the" release DOI - attach other e-book...

- [ ] exclude node.js dependencies from the git repo - [ ] export the gitbook to an external repo (should be osodos.github.io) - [ ] make it so that...