Ruolin Liu

Same issue here. Any updates?

I found out a multiple-sample vcf will give this error.

I want to upvote this issue. +1

I have the same problem. The `-l` option is disabled in `msisensor pro`, line 480 here https://github.com/xjtu-omics/msisensor-pro/blob/master/cpp/distribution.cpp#L480. The `-p` does not change the lower bound. Also, it is not clear...

Thanks for the quick response. I know user can filter the bam first. But it is an extra step. It is good to exclude supplementary too. Those reads are inflating...

Thanks!

This is the problem with using a short context to scan a pattern, in this case the 5-mer (as in the default). When the contexts happen more than 1 time...

I just check the code. It seems that the context length cannot be large than 8, since you use bit16 to store the context. ``` bit16_t flankH = 0; bit16_t...