RuizGo

how can i get filtered position?

1

I use command python /opt/hap.py/bin/hap.py trust.vcf test.vcf.gz -T /data/target.bed -o ./test In summary file，filter column，I can see ALL,PASS，But i didn't find the location filtered, how to find it?thks

read Chimeric.out.junction ERROR，about pandas

1

Dec 05 09:41:16 ..... loading genome Dec 05 09:42:08 ..... started mapping Dec 05 09:53:04 ..... finished mapping Dec 05 09:53:04 ..... finished successfully 2020-12-05 09:53 - INFO - STAR...

decompress error

2

command: ``` unnaf --fastq fastq.gz.naf |gzip - >fastq.gz.naf.gz unnaf error: can't allocate 35115481985 bytes ``` file size: fastq.gz.naf 43G