Renee Salz
Renee Salz
I have a bed12 file that contains all transcripts, with thickStart and thickEnd denoting positions where CDS starts and ends. Right now you have to specify your biotype (in my...
Hi, I'm running metamorpheus on my cluster with task toml files. I was wondering if there was a way to add more cores (maybe an extra line in toml file?)....
I wanted to bring this issue to your attention I use `pfam_scan.pl ` (conda) on the command line and input the results with `analyzePFAM()`. I am using IsoQuant data. I...
Hi, I have a more conceptual question about the shared peptide quantification. I am using metamorpheus and then running flashlfq after (since bayesian fc analysis isn't part of metamorpheus quant...
Hey Fairlie, me again... I would like to measure DIE between multiple conditions. At the moment only 2 conditions are allowed for the obs_conditions argument. In theory, the method you...
I haven't tried yet, but would be possible to incorporate variants into the ouput fasta either by submitting a GVF format file (https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-8-r88) or a standard vcf file along with...
Hello, I want to start by saying that you guys have made a really awesome tool and it works like a charm! Great work! I'd like to make a suggestion...
I would like to use metamorpheus + rescue and resolve, so I'm having a look at main_metamorpheus.nf to try to run it. Some questions: 1 - can't find the toml...
Hi I ran a sample with fixed TMT 6plex modification but there is no mention of which of the 6 reporter tags are found. I am only interested in one...
Hi Andrey- a quick feature request Could you please add annotations about readthrough/polycistronic transcripts? That would help reduce the need to use other additional tools like isotools. Thank you