Minipolish
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rrwick
A tool for Racon polishing of miniasm assemblies
Hi, I have installed Minipolish via pip3 from Github. I can not find miniasm_and_minipolish.sh on my system. I can also not figure out to which location pip installed it. I...
Hi @rrwick! Your tools are awesome, thank you very much! I just had a quick question. Can I use Minipolish with an unpolished assembly from say Raven (polishing disabled) or...
Hi @rrwick, thank you for your software, I have been following quick usage pipeline user manual. the first two steps no problem: minimap2 & miniasm. but when I run minipolish...
Thanks for developing this great tool! I just wanted to add the functionality to be able to use PacBio CCS/HiFi reads. I haven't really tested if this is an improvement...
hello， Your peper describes the advantages of minipolish in polishing the genome of prokaryotes. Is minipolish suitable for polishing of eukaryotes genome?
Hi Ryan Great job. Looks like yet another really cool tool solving a bunch of important problems with long reads! I noticed that you have option for pacbio reads. However,...
Was wondering if you could add `-1` and `-2` options and run `pilon` after `racon` to further polish?
You provide a wrapper `miniasm_and_minipolish.sh` to do both steps. I was wondering if you could add option, or just run minimap2/miniasm automatically if no assembly is provided (or make it...
Hello `minipolish/misc.py` uses multiprocessing.cpu_count() to ge the max value of threads. in ``` def get_default_thread_count(): return min(multiprocessing.cpu_count(), 16)``` but multiprocessing.cpu_count() is the number of cpu in the machine. But this...
Hi, I am trying to assemble the genome of a worm, and I was hoping that minipolish would detect the mitochondrial genome and output it in the gfa file. I...
