Filtlong
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rrwick
quality filtering tool for long reads
Hello, First off, thanks for making FiltLong, it is super convenient and I use it all the time! My question is: how can I edit the code to allow me...
Hi, I tried to build Filtlong on Debian and was running the test suite: python3 -m unittest .......................FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF.FF.. ====================================================================== FAIL: test_sort_high_threshold_1 (test.test_sort.TestSort) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/andreas/debian-maintain/salsa/med-team/0_prospective/build-area/filtlong-0.2.0/test/test_sort.py",...
Hi, I'm having an issue installing filtlong. Here is the error message I get. when using make -j . I do not understand what could be the problem. hetty@PC-F95C6G3:~/Filtlong$ make...
I'm working with a large dataset of multiple files of PacBio CLR reads, and at the moment filtlong is running on a combined file containing all the data (267 Gb)....
I try to run read_info_histogram.sh, here is my command and output, (base) campus-025-033:agro_3rd dklabuser$ ./read_info_histogram.sh BC05.fastq READ SET SUMMARY ---------------- number of reads: 0 number of bases: 0 ./read_info_histogram.sh: line...
This PR adds support for multiple input files and can be a workaround for #6.
Hi Ryan, Is there a way to have Filtlong dump the length and quality score (calculated against an Illumina reference set) so that I can generate those qual x length...
Lines 250 and 285 in histogram.py cause the Python3 print function to bug out when trying to parse the default "options.dot" character, "∎". Throwing an error like this: **Traceback (most...
I'm using the split and trim function against a reference, but it's too slow to use. Is there an option of using multiple threads? Thanks
HI [Kin002_nano_QC.txt](https://github.com/rrwick/Filtlong/files/4074060/Kin002_nano_QC.txt) I made read_info_histograms.sh work to check my nanopore long reads quality, and found that the output of the MEAN QUALITIES are not right. Could anyone please help me...