Deepbinner
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rrwick
a signal-level demultiplexer for Oxford Nanopore reads
Hi Ryan, We have a couple of flow cells worth of reads with LSK-109 kit, and would be happy to share them with you. They are from the C. elegans...
I have based called fast5 to be classified and I used EXP-NBD104 native barcoding expansion. Not sure whether Deepbinner works for me which is trained with NBD103 (not seen from...
Hi everyone, I am facing an issue when running Deepbinner to demultiplex my fast5 files on a Mac Os: ``` (base)$ deepbinner classify --rapid ./fast5_pass/ > classifications Traceback (most recent...
I just added three lines of inactive code that should fix the issues in case someone has TF V2. I'm sorry I wasn't able to find a way to check...
Dear Ryan, I would like to take you up on your offer to send you raw fast5 files for training on a non-ONT set of barcodes. I hope I have...
Hi! I'm using Deepbinner because the previous program I used left many of my reads as 'unclassified'. But, no matter what I try to run I always get this error:...
I try to run the code `deepbinner bin --classes classifications --reads fastq/fastq_runid_74754dbc687adce684a7d674b20b70a89ff319aa_0_0.fastq --out_dir demultiplexed_reads` But got following error: `Loading classifications... done 145 total classifications found Making output directory: demultiplexed_reads/ Traceback...
Great tool, testing it out now. Two questions: 1. When using --require both for realtime, if I am using presets, I get "Error: --require_both can only be used with two...
Hi, I hope this has an obvious answer. I cannot figure out how to get deepbinner to exit its "waiting for new files" mode to continue a bash script/job that...
Dear @rrwick Compare to use start model only and both model , it seems to spend double time for model prediction. For my research, I need to do it parallel,...
