Badread
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rrwick
a long read simulator that can imitate many types of read problems
**Is your feature request related to a problem? Please describe.** The simulator is very slow when it comes to - Adjusting the lengths of reference contigs. This might be not...
I have simulated a set of ONT long reads (10x) of E coli using the Badreads simulator tool. I was wondering is there any way I can know the co...
**Describe the bug** We are trying to simulate "very good" sequencing data for an amplicon that is almost the length of the ~15kb genome we are sequencing, but the read...
Hello, thank you very nice for this nice tool! I am working on the analysis of repeat expansions in few human genes from different patients. Basically we amplify a target...
I installed the program using: `conda install -c bioconda badread -y` But got the error: > Traceback (most recent call last): > File "/global/homes/s/snayfach/.conda/envs/flye/bin/badread", line 10, in > sys.exit(main()) >...
When stddev is zero, mean is not cast to an integer, raising an error for `return junk_frag[:fragment_length]`
Is there an option to simulate circular genomes during badread simulation, such as organelle chloroplasts, because when I simulate organelles, the display is linear
**Is your feature request related to a problem? Please describe.** In order to evaluate my error correction tool, I though to build a confusion matrix by filtering one dataset containing...
Hi, I have a general question about Nanopore sequencing, based on the documentation of Badread. I hope this is the most appropriate way to ask this! In the Chimera section...
