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How to find the co ordinates of long reads with respect to the reference genome from which the reads were simulated

Open Oieswarya opened this issue 3 years ago • 0 comments

I have simulated a set of ONT long reads (10x) of E coli using the Badreads simulator tool. I was wondering is there any way I can know the co ordinates (positions) of these long reads in the reference genome from where they were simulated. I know most simulators have some metadata attached to the files that they are generating, but I could not find any thing like that in the Badreads file.

Oieswarya avatar Aug 11 '21 00:08 Oieswarya