Robert A. Petit III
Robert A. Petit III
Came to report the same. Ariba is affected as well.
Would making VERSION able to be set at the command line (e.g. `make VERSION=2.4.1`) be ok? It seems weird to let the VERSION be set by the user, but thinking...
Hello @djbradshaw2 Has there been any updates regarding this issue? Thank you!
@djbradshaw2 Thank you for the follow up! If you could reopen that would be great. @BenLangmead @ch4rr0 Are there plans to pursue this, or should I submit a patch on...
Hi @ch4rr0 ! This issue is related to the BioConda release, and dealing with the `VERSION` file. Here's a PR with my suggested revision: https://github.com/BenLangmead/bowtie2/pull/302 Link to issue on BioConda:...
Hi @SionBayliss, Going to double check this, but I think we might be OK (haha at least by my interpretation). I still agree though the `--use_paired_ends` should probably be removed....
Hi @SionBayliss Only tested on a single assembly, but I think we are OK! ### Shovill's current method ``` skesa --gz --fastq flash.extendedFrags.fastq.gz --fastq flash.notCombined_1.fastq.gz,flash.notCombined_2.fastq.gz --use_paired_ends --contigs_out skesa.fasta --min_contig 1...
That's a great question, for some reason I had it in my head Lighter only supported paired-end reads. I'll get it added back
I'm thinking about implementing this. What are your thoughts (preference) on a separate command (shovill-se?) for only SE reads, or adding the "PE or SE" logic to shovill? Con for...