Rozaimi Razali

--meta and --minRatio options in Minimac4

3

Hi. In the Michigan Imputation Server pipeline page (http://imputationserver.readthedocs.io/en/latest/pipeline/), the Minimac4 command is using --meta and --minRatio in Minimac4? However, I cannot find that option when I install the Minimac4...

Where is Minimac4-omp ?

1

Hi. I was wondering if the current version of Minimac4 contains the omp capability? If not, how can it do multi-threading? Thanks

KeyError in CrossMap version 0.4.2

3

Hello. I am getting the following KeyError message: > @ 2020-08-09 09:47:32: Read the chain file: GRCh38_to_GRCh37.chain.gz @ 2020-08-09 09:47:34: Updating contig field ... @ 2020-08-09 09:47:34: Lifting over ......

What is the format for --snp_locations file?

1

Is it one column containing the end position?

Segmentation during scanning for optimal CRF weight for certain chromosomes only

4

Hello. For chromosome 6 to 22, it works fine. But I am getting segmentation fault only for the first 5 human chromosomes. > Loading genetic map for chromosome 1 ......