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AlignK not working with increasing numbers of samples

6

[alignK_not_working.zip](https://github.com/royfrancis/pophelper/files/6133015/alignK_not_working.zip) The alignK step seems to work fine for me in some situations but not others. Example below run in exactly the same way is using the same dataset twice...

mcfiston

alignK not working across values of K

4

Hi, I have created averaged barplots for each K using mergeQ, and would now like to plot them stacked together with each population cluster having the same colour across each...

weeds23

Hi, I am probably missing something really obvious, but is there a way to flip the plotting coordinates (have samples along the y-axis) of the stacked assignment barplots? I attempted...

PeteCowman

Problem structure file format pop info

1

Hi, I have an issue when I am using pophelper with a structure file containing pop information. The format doesn’t seem to be recognized by the function `readQ` because of...

GinnieT

Unable to install pophelper in r version 4.1

2

* Please describe the circumstances under which you got the error # unable to intall pophelper in r version 4.1 * Paste the code that you executed *# install_github('royfrancis/pophelper') *...

afolabiowoloye

Missing one subpopulation in the plot - subsetgrp

1

Dear, I am trying to plot fastSTRUCTURE results using pophelper. However, I using a list of individuals with the subpopulation label (pop_info). The first subpopulation "BOP" has 159 individuals and...

mullerbsf

Unable to import meanQ file from fastStructure result

2

* Hi, I have run fastStructure analysis using GBS data from K1 to K10. So I have 10 meanQ files. However, when I try to import the files using this...

sitihazirah

* Please describe the circumstances under which you got the error * Paste the code that you executed * Paste the error message returned * What version of pophelper are...

pritih85

R version control error for pophelper

3

Hi I am having some problem installing pophelper package in R version 3.6.0 for Windows 10. I am using the following code: # code system('defaults write org.R-project.R force.LANG en_US.UTF-8') install.packages(c("Cairo","ggplot2","gridExtra","gtable","tidyr","devtools"),dependencies=T)...

aramo685

I have 2 sets of group label sets: short and long label sets. For the short and long label set, I would like to use _grplabangle = 90_ and _grplabangle...

NamLQ