Roy Francis

PRJN id not recognised

2

### Description of the bug PRJNA625551 id is not recognised by the pipeline. Perhaps I am using it incorrectly. ### Command used and terminal output ```console nextflow run nf-core/fetchngs --input...

I setup box-linux-sync and got it to work. I cannot write anything to it even with sudo. Now I suspect this is because it was installed as root. ``` drwxr-xr-x...

run_with_themer() style depends on browser

1

I have tried `bslib::run_with_themer()` in chrome, firefox and safari. The **bootstrap** and **shiny** themes are examples where they are very similar, but not identical.   The **cosmo** theme is...

Convert to datatable?

2

Is it possible to convert kable to `DT::datatable` while preserving the formattings?

quarto and fontawesome icons do not work properly with styling

1

## kable Code ```` --- title: FontAwesome and Kable --- {{< fa brands pagelines >}} {{< fa seedling >}} {{< fa plant-wilt >}} ```{r} library(dplyr) library(knitr) icons % mutate(Species=paste0("",icons," ",Species,""))...

My original data is at well level (in a 384 well plate). There are multiple biological and technical replicates for each sample. For exploration, i would like well level data...

Allow user to hide/show columns

3

Is there is mechanism to display few columns by default and leave it to the user to show more if needed? [This](https://htmldom.dev/show-or-hide-table-columns/) seems to be a nice implementation. ![Screenshot from...

Error in py_call_impl(callable, dots$args, dots$keywords): AttributeError: Module 'scipy' has no attribute 'random'

8

I have installed a conda env with mofapy. ``` > reticulate::py_config() python: /home/roy/miniconda3/envs/mofa/bin/python libpython: /home/roy/miniconda3/envs/mofa/lib/libpython3.10.so pythonhome: /home/roy/miniconda3/envs/mofa:/home/roy/miniconda3/envs/mofa version: 3.10.6 (main, Oct 24 2022, 16:07:47) [GCC 11.2.0] numpy: /home/roy/miniconda3/envs/mofa/lib/python3.10/site-packages/numpy numpy_version: 1.23.4...

Automated install / Reinstall entire library

2

I am wondering if there is a convenient way to reinstall an entire package library from a system to another system. I know that renv is used for this, but...

Convert yes/no to true/false

6

`write_yaml()` seems to be converting boolean values to **yes/no**. How can I leave this as it is. ie: **true/false**? `yaml 2.3.7`