rowanhowellGE

Tombo resquiggle error

1

Hi, I am trying to resquiggle some fast5s but am running into the following error: ``` Traceback (most recent call last): File "/opt/conda/bin/tombo", line 8, in sys.exit(main()) File "/opt/conda/lib/python3.9/site-packages/tombo/__main__.py", line...

I am trying to run methylprep process from the command line without poobah filtering. Documentation says: ``` --poobah By default, any beta-values or m-values output will contain all probes. If...

Hi, Sometimes when using the modbamtools plot --cluster feature (modbamtools v0.4.8), I will get an error message and no output: ``` File "/opt/conda/bin/modbamtools", line 8, in sys.exit(cli()) File "/opt/conda/lib/python3.9/site-packages/click/core.py", line...

Feature request: allele depths in FORMAT

2

Hi, We have some tools that expect to see allele depths in FORMAT column (ie A,C,G,T or AU,CU,GU,TU) and TIR/TAR for indels. Would be great if there was a way...