roselucia

Hi @brentp Thanks for your response. Do I understand you correct, that I can use "dps_samplename" in my Gemini query to obtain the DP of the Format column? Could I...

Hi, thanks for the response. I will stick to gt_depths and gt_alt_freqs then and just keep in mind that this differers form FORMAT DP und FORMAT VF of the original...

Hi, thanks for your response. Someone from the Illumina Technical Support already helped me out. However, he had a different explanation: "Allele depth will only account for reads assigned to...

Good morning, thanks for your fast response. Do you maybe have an explanation for me why on github it says that the DP values as well as the AD values...

Hi, many thanks for your help. So the explanation why the DP value can also be smaller than than the AD value of the Illumina Technical Support is incorrect then?...

Hi, thank you ever so much. So I understand correct, that the DP value can be smaller than the sum of AD REF and AD ALT, because additional filtering steps...

Thanks! Alle the best, Rose > Am 10.10.2019 um 20:32 schrieb tamsen : > > There will be various levels of filtering, and read stitching, and for some types of...

Hi, may I ask you one further questions? You told me that the AD value is filtered. ("So ALL reads used by Pisces are filtered. Pisces reads in the bam...

Hi Tamsen, may I send you a private email or message? If so I would appreciate a contact. Thanks a lot! Rose