Rohan Banerjee

mAP is coming out to be 0.00

1

Hi @Cartucho Thank you for the amazing script I am having an issue while calculating the mAP for my class. In my case, I just have a single class to...

`sct_image -pad` cannot pad a single-slice image extracted from a 3D image

3

### Description My overall goal is to pad single slice images using `sct_image`. For context, I have a complete image and I split the images into single slices along the...

Unexpected behaviour of the `-set-qform-to-sform` flag under the `sct_image` command

2

### Description For a sform error than nnUNet is throwing during inference, I am trying to copy the qform values to the sform values using the following command: ``` sct_image...

Experimental pip-based installation instructions are missing `sct_download_data` steps

2

### Description I have setup the [template generation pipeline](https://github.com/neuropoly/template/tree/nb/updated_all) in Compute Canada. I have installed SCT on it using the guidelines provided [here](https://spinalcordtoolbox.com/user_section/installation/mac.html?highlight=install#option-3-install-with-pip-experimental). A part of the template generation pipeline...

Segmentation and uncertainty masks on test set

1

The README does not provide the scripts regarding how to get the binary segmentation masks and the uncertainty masks of the test set. What would you say would be the...

`ValueError: shapes not aligned` when generating QC report for BOLD data

9

Old issue description (outdated) #### What is happening? I am trying to use the `-set-sform-to-qform` flag of the `sct_image` command. I observe that the changes are not reflecting in the...