minion_qc

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Incompatible specifications using Conda installation with Python 3.9

1

Hi all, I have tried to solve the installation using the [bioconda channel](https://anaconda.org/bioconda/r-minionqc). However I cannot figure out how to make it work and apparently the problem comes from having...

Gerlex89

Hi, Just came through this issue. I first thought it was a problem due to to nfs storage and try with a prior local copy of the file. Below is...

steffcruve-github

Adding MinIONQC as module to MultiQC

12

Hi, I am [working on including support](https://github.com/ManavalanG/MultiQC) for MinIONQC in [MultiQC](https://multiqc.info/), which is a fantastic results aggregator. So far, I have added results using `summary.yaml`; see this html file for...

ManavalanG

Use of num_events_template [legacy]

1

Hey @roblanf Events are no longer relevant with modern basecallers and Guppy considers all event fields in the [sequence summary as legacy](https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revs_14dec2018/input-and-output-files). A cursory look at the code suggests only...

iiSeymour

Execution halted Error

6

Hi, Thanks for this great tool! However, I found that if I run the latest version 1.4.2, I will get an error message as follows, but version 1.4.1 works fine...

jliu2019

Script fails to finish creating plots

9

Hi, I'm trying to run MinIONQC.R on some nanopore data I basecalled using albacore (with and without the --barcoding option. The script runs and creates some of the plots and...

avantonder

Support for calibration strand data

2

First, off: Thanks for this great tool! It's very useful. I have a feature request for you to consider: The current guppy basecaller has an option called '--calib_detect'. When engaged,...

MikeAxtell

Length vs. Q and channels epb plots empty

13

I ran the script on a recent dataset and mostly worked fine except that the two plots length_vs_q.png and flowcell_channels_epb.png don't have anything plotted on them.   What could...

ghost

E.g. lines for N50, mean, median.

roblanf

Problems running MinIONQC.R script

4

Good Morning, I am experiencing problems in running the minion_qc script in R. I believe I must be doing something wrong, as I have little experience with R. This is...

Laura1129