roblanf

Brett - start a new issue for the threading problem. Paul - good luck! On 1 February 2015 at 16:07, Brett Calcott [email protected] wrote: > The threading problem sounds odd...

@Kuanhao-Chao, what safety-checks can we add into the data-loading process to make users aware of this? My suggestion is that when the data loads we output to the display a...

Hi Peter, Wow, thanks for this update. Definitely something we'll have to look into. Howard - I guess there should be ways that we can package up all the fonts...

@HowardChao, it seems sensible to add a slot for reads that are too short. If we do this, then the excluded reads can be *included* later if a user changes...

Hi @tomsauv, Thanks for raising this. The merge happens because you've told sangeranalyseR to _try_ and merge these two reads into a contig, so it will go ahead and attempt...

@Kuanhao-Chao, we need to have a think about ways to identify, flag, (and maybe an option to disallow) these kinds of alignments. Post any thoughts and ideas here!! The simplest...

just a small update - it occurs to me that any mismatch threshold should be calculated only for the bases where >1 read has contributed to the contig! And also,...

Hi @foersterst! M1 and M2 methods: M1 is the modified Mott's trimming algorithm that you can also find in Phred/Phrap and Biopython. M2 is like trimmomatic's sliding window method. In...

hi @joelnitta, If you could share an example with us via email (whatever the smallest example that doesn't work how you want it, but seems like it should be something...

Good point - dlvr.it is free for a few accounts, but you run out of space pretty quick...