roblanf

One more thought. The Python 2.7.x docs say this on buffering: ``` bufsize, if given, has the same meaning as the corresponding argument to the built-in open() function: 0 means...

Timings from the server (processors are slower than my desktop, hence the slower rate on 1 processor etc). Versions are as above. Version 'buf' is with bufsize=-1 when calling Popen()....

I wonder if our splitting the output of stderr and stdout could be causing the zombies here @brettc? Here's an interesting thread on stack overflow which seems to suggest something...

Here's another test. This time on the Fong dataset with 168 data blocks, but with only the first 10 taxa to speed things up a little. Old: current master branch...

'err' approach is published in this branch: https://github.com/brettc/partitionfinder/tree/buffer2

Results of the user running the tests: still a plateau after 2 processors: ``` I've made tests with 1 2 8 20 proc on the same machine on our cluster...

Looks like their server is down for now. Best to check back in a while. Rob On Wed, 11 Sep 2019 at 01:23, gabyl wrote: > http://continuum.io/downloads > > [image:...

There are a couple of places this could happen: 1. In the calculation of subset similarity. This uses a bunch of numpy routines to figure out the manhattan distance between...

This is a pretty big pull request, and includes ALL of Paul's stuff as well as ALL of April's stuff (right @pbfrandsen? @wrightaprilm?). I wonder if we should wait until...

OK, I'm an idiot. I thought this was the big merge into the main branch, now I see you're merging with Paul_develop. @brettc, what do you think the best way...