Robin Schmid
Robin Schmid
@Adafede linked me. I am one of the admins from the MZmine project: https://github.com/mzmine/mzmine3 Some web API that other tools can trigger would be really nice but securing funding to...
@hechth shipping a python CLI tool is rather big because you have to ship the VM as well, am I right? I like the idea of an annotation server running...
The idea would be to distribute a container and people could put it on their server or data analysis computers. Once startet all other applications could use matchms via rest...
That sounds great. But this would always need to load the spectral library before matching or could you have a tool running idle as a service with preloaded data?
Why not use imzML? It is very similar to mzML and adds imaging-specific information to it.
its based on mzML and supports centroid data: https://ms-imaging.org/wp/imzml/ there is jimzML parser and the pyimzml parser (https://github.com/alexandrovteam/pyimzML)
Corinna might have some interesting imaging data with - MS1 - tims - MS1 - tims all ion fragmentation
Sounds good. better than noise level. would it then be INTENSITY > 1000 or MININTENSITY=1000
I like the QUERY scandata WHERE .... format. The end result of scaninfo(MS2DATA) acts like a condition - in the end you will remove all MS1 scans from the results...
Should this be a general validator or for the MZmine output? We should also consider the Ion Identity Networking columns in the quant table