puzzle

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- [ ] Puzzle load: “WARNING 52 already exists in the database” but does it overwrite the case or not? Would be nice with some additional information. - [ ]...

henrikstranneheim

SV filtering comments

2

Hej @moonso, The new SV filters work nicely. Two quick thoughts: - Dynamic population of SV types in filter. For example, if only types DEL, INV and BND exist in...

vasiliosz

- [ ] https://flask-mongoengine.readthedocs.org/en/latest/

moonso

Auto enable filters and columns based on vcf header

5

Would be nifty to check at least header (best existence of actual tag for any variant) to see what filters and display columns to enable. Empty ones, or filters for...

dnil

Binding gene list to multiple cases fails in GUI

1

When adding a gene list to a case, the dropdown for selecting cases changes to only show the case which now has the list bound. In order to bind to...

dnil

Keep an alias/location file for common annotation program profiles

1

A table/structure with locations for common annotations should be kept to make it easy to keep compatibility with common annotation programs w/o having to mod the code. E.g. frequency.EXaC {...

dnil

Checkout svviz

3

http://svviz.github.io/svviz/

moonso

One should be able to point to a chanjo database and get chanjo reports from the case/individual/variant view

moonso