HmtNote

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This PR updates [pip](https://pypi.org/project/pip) from **20.2.2** to **23.3**. Changelog ### 23.3 ``` ================= Process ------- - Added reference to `vulnerability reporting guidelines <https://www.python.org/dev/security/>`_ to pip's security policy. Deprecations and Removals...

pyup-bot

This PR updates [numpy](https://pypi.org/project/numpy) from **1.16.4** to **1.26.1**. Changelog ### 1.26.1 ``` discovered after the 1.26.0 release. In addition, it adds new functionality for detecting BLAS and LAPACK when building...

pyup-bot

This PR updates [aiohttp](https://pypi.org/project/aiohttp) from **3.5.4** to **3.8.6**. Changelog ### 3.8.6 ``` ================== Security bugfixes ----------------- - Upgraded the vendored copy of llhttp_ to v9.1.3 -- by :user:`Dreamsorcerer` Thanks to...

pyup-bot

This PR updates [Sphinx](https://pypi.org/project/Sphinx) from **3.0.4** to **7.2.6**. Changelog ### 7.2.6 ``` ===================================== Bugs fixed ---------- * 11679: Add the :envvar:`!SPHINX_AUTODOC_RELOAD_MODULES` environment variable, which if set reloads modules when using...

pyup-bot

This PR updates [wheel](https://pypi.org/project/wheel) from **0.33.4** to **0.41.2**. *The bot wasn't able to find a changelog for this release. [Got an idea?](https://github.com/pyupio/changelogs/issues/new)* Links - PyPI: https://pypi.org/project/wheel

pyup-bot

* HmtNote version: 0.7.2 * Python version: 3.6.15 * Operating System: linux ### Description I would greatly appreciate it if you could look into this matter and help me to...

xiucz

This PR updates [click](https://pypi.org/project/click) from **7.0** to **8.1.6**. Changelog ### 8.1.4 ``` ------------- Released 2023-07-06 - Replace all ``typing.Dict`` occurrences to ``typing.MutableMapping`` for parameter hints. :issue:`2255` - Improve type hinting...

pyup-bot

This PR updates [pandas](https://pypi.org/project/pandas) from **0.24.2** to **2.0.3**. *The bot wasn't able to find a changelog for this release. [Got an idea?](https://github.com/pyupio/changelogs/issues/new)* Links - PyPI: https://pypi.org/project/pandas

pyup-bot

This PR updates [requests](https://pypi.org/project/requests) from **2.22.0** to **2.31.0**. Changelog ### 2.31.0 ``` ------------------- **Security** - Versions of Requests between v2.3.0 and v2.30.0 are vulnerable to potential forwarding of `Proxy-Authorization` headers...

pyup-bot

Hi, We are using hmtnote in our research and want to use it within an nf-core pipeline. We have tried running hmtnote dump while using docker and singularity containers but...

Lucpen