ginkgo

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No server availble for the tasks

2

Hi, It looks like the web platform could not handle new tasks with the message: "No server is available to handle this request." Ginkgo is a great tool and I...

wmyuan37

Cannot select any cells in Step1

3

After uploading the .bed files, I cannot select any cells in Step1, therefore when trying to start the analysis the error message 'Please choose at least 3 cells for your...

RonjaJohnen

hg38

4

Hi! For several days I am trying to generate genome files for hg38. Although I think I replaced all necessary paths in all the scripts that required it, it still...

pawelqs

Hello, I wanted to know if the server is down, I was able to use the Ginkgo web platform successfully till yesterday morning, and since then, I keep getting a...

sbradford2

I am running `analyze-subset.R` command for individual MAD scores, but it gives the following error ``` Error in FUN(left, right) : non-numeric argument to binary operator Calls: sweep -> Ops.data.frame...

srbehera

Hi, I am trying to run Ginkgo on some data published by the Navin lab for the purpose of comparing performance. The data are described in https://www.nature.com/articles/s41586-021-03357-x I am having...

leachim

Stalling during Calling copy number events (Computing Cluster (Copy Number))

2

Hi there. I am running into an issue with web-based Ginkgo where the process is stalling at 98% of Step 2: Calling copy number events ...(Computing Cluster (Copy Number)) I...

ncasiraghi

Gingko Web Platform: Copy number calls stalling with FACS input.

12

I'm analyzing a set of about 300 single cells on the Gingko web app. The karyotypes are very strange so I input a table of predicted ploidy for the cells...

andrewrlynch