Rob Egan

segfault on some reads

26

Hello, I'm getting a segfault when building the latest version: 817ba03fc19e0fb2076381eb9536ff99240bd468 Using this graphmap command line: graphmap align --threads 1 --ref Chlamy_and_lambda.fa --index Chlamy_and_lambda.fa.graphmap.gmidx --reads y.fastq -o y.sam using the...

Add Blocked GZip Format (BGZF)

3

This patch adds the ability for pigz to compress and uncompress the Blocked GNU Zip Format (BGZF) variant of gzip whose specification can be found here in the SAM specification....

This patch allows a .zip file (of fast5 files) to be processed efficiently and in the same way that the tarball of fast5 files are processed. I have found the...

Subject says it all.