Ryangguk Kim

The error message is a bit difficult for figuring out what is wrong. I'll improve it and let you know.

Hi @EugeneEA, thanks for bringing attention to the issue. As you found, OC does not have a RefSeq mapper yet. The quickest fix for this would be to start with...

Hi @anleopa, are you using run.opencravat.org or a locally installed OpenCRAVAT?

Do you see .err in addition to .log file? .err file has detailed information of every error.

Liftover failure is usually for the locations which do not have a mapping position in hg38. `Syntax error` in aggregator is strange. Can you copy and paste one example of...

Thanks for the examples. Regarding `syntax error`, there should be a traceback in .log file for the error. Can you copy and paste that portion of .log file? That will...

Thanks. Regarding the `syntax error`, the input lines which gave this error in your example do not seem to have proper syntax for a VCF data line. For example, This...

> I have also found that in some cases the ref and al alleles change between assemblies. For example, rs67270413 is G>A in GRCh37 and A>G in GRCh38. In this...

> Yes, you are right about the INFO fields... This is the output of a pipeline, but I don't have the details about the technology/software used... I can try to...

@jkobject Sorry, it must have been a mistake. It has been restored.