assembly-stats issues

help running the program

7

Hi, Thank you for writing this wonderful program. These figures look really nice. However, as I have no knowledge of the java program and being a newbie in bioinformatics. I...

upendrabhattarai

Using github pages to run assembly-stats

2

Hi there, I hope this is okay to post here. If you are having trouble running `assembly-stats` checkout this fork which demonstrates how to run using github pages: https://github.com/ammaraziz/assembly-stats Demo...

ammaraziz

json produced by perl scripts not working?

4

i have the program working locally (tested it on the example jsons provided). However, it displays a blank white screen when i substitute these for my own jsons generated by...

mattheatley

How to generate the plot and table?

1

HI, I'm actually trying to use your programm but I'm little vit stuck.. I already have generated the .jon file by doing: And used this script: ``` assembly stats d3.json("output.json",...

StromTroopers

Can not get the software work

7

I followed your documentation, and get the .json file ( let's call it output.json) by asm2stats.pl, but I don't the next step to visualize that output file, could you please...

xushaolin

is there a way to download a static plot as a vector image (e.g. PDF or .svg?)

1

Hello Richard, These are really great. Do you know of an easy way to download the d3 object as a static image? I've googled around and none of the solutions...

pbfrandsen

Busco example

1

Hi: Like many, I really like your output for genome visualisation. I would like to add the BUSCOs for my genome, but I have copied/pasted the written example to include...

aebaci